PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37790.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 301aa    MW: 34318.2 Da    PI: 8.6816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37790.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-063357123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      + C+   C+ s+srk++L+rH+ tH
  Bradi2g37790.3.p 33 FACHvdGCPFSYSRKDHLNRHLLTH 57
                      78*********************99 PP

2zf-C2H218.55.6e-066287123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      + Cp   C++ Fs++ n++rH +  H
  Bradi2g37790.3.p 62 FICPmeGCNRKFSTRGNMQRHVQEmH 87
                      78*******************99877 PP

3zf-C2H218.94.1e-0699123123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp  +Cgk F+  s L++H  +H
  Bradi2g37790.3.p  99 FICPevNCGKAFKFASKLQKHEDSH 123
                       78*******************9888 PP

4zf-C2H217.31.3e-05190214223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ sFs ksnL +Hi+  H
  Bradi2g37790.3.p 190 KCHfeDCKCSFSKKSNLDKHIKAvH 214
                       7********************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-73059No hitNo description
Gene3DG3DSA:3.30.160.601.2E-93059IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.3073362IPR007087Zinc finger, C2H2
SMARTSM003550.00183357IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803557IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-76088IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-76088No hitNo description
SMARTSM003551.9E-56287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0536292IPR007087Zinc finger, C2H2
PROSITE patternPS0002806487IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-695123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.66E-596124No hitNo description
SMARTSM003550.04199123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03299128IPR007087Zinc finger, C2H2
PROSITE patternPS000280101123IPR007087Zinc finger, C2H2
SMARTSM003556.5131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
SMARTSM0035513159180IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-6170211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-8170231No hitNo description
PROSITE profilePS5015711.863189219IPR007087Zinc finger, C2H2
SMARTSM003550.098189214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5213242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954220246IPR007087Zinc finger, C2H2
SMARTSM003555.3220246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQEGLEWTSI GMGDPPEKLH QDCLIHVLLQ RPFACHVDGC PFSYSRKDHL NRHLLTHQGK  60
LFICPMEGCN RKFSTRGNMQ RHVQEMHKDG SPCESKKEFI CPEVNCGKAF KFASKLQKHE  120
DSHAKLEYTE VICCEPGCMK TFTNVECLKA HNQSCHRYVQ CDVCDTKQLK KNFKRHQRMH  180
EGSRVAETVK CHFEDCKCSF SKKSNLDKHI KAVHEQSRPY ACGFAGCGKK FSYKHVRDNH  240
EKSSAHVYFE GDFVESGPHP GGRKRKPIPV DTFTRKRVAA PGDVPTYADG TGYLRWLLSG  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-133015340157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-133015340157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755326.10.0PREDICTED: transcription factor IIIA-like isoform X2
RefseqXP_014755327.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ43e-87TF3A_ARATH; Transcription factor IIIA
TrEMBLI1HMH70.0I1HMH7_BRADI; Uncharacterized protein
STRINGBRADI2G37790.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-89transcription factor IIIA